Alternative splicing

This is the topic I am interested. Here are some links.

Plant Genome Database (GDB): Alternative splicing in plant (ASIP)
Genome-wide comparative analysis of alternative splicing in plants, Bing-Bing Wang and Volker Brendel, PNAS 103:7175-7180, 2006.
Cross-Species EST Alignments Reveal Novel and Conserved Alternative Splicing Events in Legumes, Bing-Bing Wang, Mike O.Toole, Volker Brende, Nevin D. Young, BMC Plant Biology 2008, 8:17.

Arabidopsis Splicing Variations

Intron Sequence Information System (ISIS)
ISIS, the intron information system, reveals the high frequency of alternative splicing in the human genome, Larry Croft, Soeren Schandorff, Francis Clark, Kevin Burrage, Peter Arctander & John S. Mattick, Nature Genetics 24, 340 - 341 (2000).

Alternative Splicing Database (ASD)
ASD: the Alternative Splicing Database, Nucleic Acids Res. 32(Database issue): D64–D69 (Jan 1, 2004), T. A. Thanaraj, Stefan Stamm, Francis Clark, Jean-Jack Riethoven, Vincent Le Texier, and Juha Muilua.

Pineapple DB website
PineappleDB: An online pineapple bioinformatics resource, Moyle, R. L., Ripi-Koia, J., Crowe, M. L., Fairbairn, D. J. and Botella, J. R. (2005), BMC Plant Biology, 5 21: 1-5.
(Moyle L Richard r.moyle1@mailbox.uq.edu.au, Crowe L Mark m.crowe@imb.uq.edu.au, Ripi-Koia Jonni jhr2@waikato.ac.nz, Fairbairn J David d.fairbairn@uq.edu.au, Botella R José j.botella@uq.edu.au)

Alternatively spliced mRNA
Data accesses and reference

Understanding alternative splicing: towards a cellular code, Arianne J. Matlin, Francis Clark & Christopher W. J. Smith, Nature Reviews Molecular Cell Biology 6, 386-398 (May 2005).

Non-coding RNA, Mattick, J. S. and Makunin, I. V. (2006), Human Molecular Genetics, 15 1: R17-R29.

RNAdb - a comprehensive mammalian noncoding RNA database, Pang, K. C., Stephen, S., Engstrom, P. G., Tajul-Arifin, K., Chen, W. S., Wahlestedt, C., Lenhard, B., Hayashizaki, Y. and Mattick, J. S. (2005), Nucleic Acids Research, 33 Sp. Iss. SI: D125-D130.

The transcriptional landscape of the mammalian genome, Carninci, P., Kasukawa, T., Katayama, S., Gough, J., Frith, M. C., Maeda, N., Oyama, R., Ravasi, T., Lenhard, B., Wells, C., Kodzius, R., Shimokawa, K., Bajic, V. B., Brenner, S. E., Batalov, S. and The FANTOM Consortium: (2005-09-02), Science, 309 5740: 1559-1563.

Splicing bypasses 3 ' end formation signals to allow complex gene architectures, Frith, MC, Carninci, P, Kai, C, Kawai, J, Bailey, TL, Hayashizaki, Y and Mattick, JS (2007), Gene, 403 1-2: 188-193.